tooluniverse-expression-data-retrieval
✓Retrieves gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation, experiment quality assessment, and structured reports. Creates comprehensive dataset profiles with metadata, sample information, and download links. Use when users need expression data, omics datasets, or mention ArrayExpress (E-MTAB, E-GEOD) or BioStudies (S-BSST) accessions.
Installation
SKILL.md
Retrieve gene expression experiments and multi-omics datasets with proper disambiguation and quality assessment.
| Specific accession | Direct retrieval | | Gene + condition | "[gene] [condition]" + species filter | | Disease only | "[disease]" + species filter | | Technology-specific | Add platform keywords (RNA-seq, microarray) |
| ArrayExpress search | BioStudies search | ArrayExpress empty | | arrayexpressgetexperimentdetails | biostudiesgetstudydetails | E-GEOD may have BioStudies mirror | | arrayexpressgetexperimentfiles | Note "Files unavailable" | Some studies restrict downloads |
Retrieves gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation, experiment quality assessment, and structured reports. Creates comprehensive dataset profiles with metadata, sample information, and download links. Use when users need expression data, omics datasets, or mention ArrayExpress (E-MTAB, E-GEOD) or BioStudies (S-BSST) accessions. Source: mims-harvard/tooluniverse.
Facts (cite-ready)
Stable fields and commands for AI/search citations.
- Install command
npx skills add https://github.com/mims-harvard/tooluniverse --skill tooluniverse-expression-data-retrieval- Category
- {}Data Analysis
- Verified
- ✓
- First Seen
- 2026-02-05
- Updated
- 2026-02-18
Quick answers
What is tooluniverse-expression-data-retrieval?
Retrieves gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation, experiment quality assessment, and structured reports. Creates comprehensive dataset profiles with metadata, sample information, and download links. Use when users need expression data, omics datasets, or mention ArrayExpress (E-MTAB, E-GEOD) or BioStudies (S-BSST) accessions. Source: mims-harvard/tooluniverse.
How do I install tooluniverse-expression-data-retrieval?
Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/mims-harvard/tooluniverse --skill tooluniverse-expression-data-retrieval Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code or Cursor
Where is the source repository?
https://github.com/mims-harvard/tooluniverse
Details
- Category
- {}Data Analysis
- Source
- skills.sh
- First Seen
- 2026-02-05