instrument-data-to-allotrope

SKILL.md

Convert instrument files into standardized Allotrope Simple Model (ASM) format for LIMS upload, data lakes, or handoff to data engineering teams.

Note: This is an Example Skill This skill demonstrates how skills can support your data engineering tasks—automating schema transformations, parsing instrument outputs, and generating production-ready code.

To customize for your organization: Modify the references/ files to include your company's specific schemas or ontology mappings Use an MCP server to connect to systems that define your schemas (e.g., your LIMS, data catalog, or schema registry) Extend the scripts/ to handle proprietary instrument formats or internal data standards

将实验室仪器输出文件（PDF、CSV、Excel、TXT）转换为同素异形简单模型 (ASM) JSON 格式或扁平化 2D CSV。当科学家需要标准化 LIMS 系统、数据湖或下游分析的仪器数据时，可以使用此技能。支持自动检测仪器类型。输出包括完整的 ASM JSON、易于导入的扁平化 CSV 以及可供数据工程师导出的 Python 代码。常见的触发因素包括转换仪器文件、标准化实验室数据、准备上传到 LIMS/ELN 系统的数据或为生产管道生成解析器代码。 来源：anthropics/life-sciences。

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