instrument-data-to-allotrope

SKILL.md

Convert instrument files into standardized Allotrope Simple Model (ASM) format for LIMS upload, data lakes, or handoff to data engineering teams.

Note: This is an Example Skill This skill demonstrates how skills can support your data engineering tasks—automating schema transformations, parsing instrument outputs, and generating production-ready code.

To customize for your organization: Modify the references/ files to include your company's specific schemas or ontology mappings Use an MCP server to connect to systems that define your schemas (e.g., your LIMS, data catalog, or schema registry) Extend the scripts/ to handle proprietary instrument formats or internal data standards

將實驗室儀器輸出文件（PDF、CSV、Excel、TXT）轉換為同素異形簡單模型 (ASM) JSON 格式或扁平化 2D CSV。當科學家需要標準化 LIMS 系統、數據湖或下游分析的儀器數據時，可以使用此技能。支持自動檢測儀器類型。輸出包括完整的 ASM JSON、易於導入的扁平化 CSV 以及可供數據工程師導出的 Python 代碼。常見的觸發因素包括轉換儀器文件、標準化實驗室數據、準備上傳到 LIMS/ELN 系統的數據或為生產管道生成解析器代碼。 來源：anthropics/life-sciences。

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