A Python library for biological data analysis spanning sequence handling, phylogenetics, microbial ecology, and multivariate statistics.
| Sequence work | DNA/RNA/protein manipulation, motif finding, translation | | File handling | FASTA, FASTQ, GenBank, Newick, BIOM I/O | | Alignments | Pairwise or multiple sequence alignment | | Phylogenetics | Tree construction, manipulation, distance calculations |
| Diversity metrics | Alpha diversity (Shannon, Faith's PD), beta diversity (Bray-Curtis, UniFrac) | | Ordination | PCoA, CCA, RDA for dimensionality reduction | | Statistical tests | PERMANOVA, ANOSIM, Mantel tests | | Microbiome analysis | Feature tables, rarefaction, community comparisons |
Bibliothèque bioinformatique Python pour la manipulation de séquences, les alignements, la phylogénétique, les métriques de diversité (Shannon, UniFrac), l'ordination (PCoA, CCA), les tests statistiques (PERMANOVA, Mantel) et les E/S au format de fichier biologique. Source : aminoanalytica/amina-skills.