Query and retrieve protein/nucleic acid structures from RCSB PDB. Use when you need to search the PDB database for structures or metadata. Supports text, sequence, and structure-based searches, coordinate downloads, and metadata retrieval for structural biology workflows.
Quickly install pdb-database AI skill to your development environment via command line
Source: aminoanalytica/amina-skills.
The Protein Data Bank hosts over 200,000 experimentally determined macromolecular structures plus computed models from AlphaFold and ModelArchive. This skill provides programmatic access to search, download, and analyze structural data.
| Structure Retrieval | Download coordinates for a known PDB ID | | Similarity Search | Find structures similar by sequence or 3D fold | | Metadata Access | Get resolution, method, organism, ligands | | Dataset Building | Compile structures for ML training or analysis | | Drug Discovery | Identify ligand-bound structures for a target |
| Quality Filtering | Select high-resolution, well-refined structures |
Query and retrieve protein/nucleic acid structures from RCSB PDB. Use when you need to search the PDB database for structures or metadata. Supports text, sequence, and structure-based searches, coordinate downloads, and metadata retrieval for structural biology workflows. Source: aminoanalytica/amina-skills.
Stable fields and commands for AI/search citations.
npx skills add https://github.com/aminoanalytica/amina-skills --skill pdb-databaseQuery and retrieve protein/nucleic acid structures from RCSB PDB. Use when you need to search the PDB database for structures or metadata. Supports text, sequence, and structure-based searches, coordinate downloads, and metadata retrieval for structural biology workflows. Source: aminoanalytica/amina-skills.
Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/aminoanalytica/amina-skills --skill pdb-database Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code, Cursor, or OpenClaw
https://github.com/aminoanalytica/amina-skills