Control PyMOL molecular visualization through Claude Code. Use when asked to "visualize protein", "render structure", "show cartoon", "color by chain", "ray trace", "set up pymol", "install pymol", or work with molecular graphics. Handles setup, visualization commands, and publication-quality figure generation.
Quickly install pymol AI skill to your development environment via command line
Source: aminoanalytica/amina-skills.
This skill enables Claude Code to control PyMOL molecular visualization software through the claudemol socket interface. It supports:
| Setup | Install PyMOL, configure claudemol, verify connection | | Structure Loading | Load PDB files, fetch from RCSB, open local structures | | Representations | Cartoon, surface, sticks, spheres, ribbons, lines | | Coloring | Color by chain, spectrum, B-factor, custom colors | | Selections | Select residues, chains, ligands, binding sites |
| Camera | Orient view, zoom, rotate, save viewpoints | | Ray Tracing | High-quality renders, publication figures | | Export | Save images (PNG), sessions (PSE), movies |
Control PyMOL molecular visualization through Claude Code. Use when asked to "visualize protein", "render structure", "show cartoon", "color by chain", "ray trace", "set up pymol", "install pymol", or work with molecular graphics. Handles setup, visualization commands, and publication-quality figure generation. Source: aminoanalytica/amina-skills.
Stable fields and commands for AI/search citations.
npx skills add https://github.com/aminoanalytica/amina-skills --skill pymolControl PyMOL molecular visualization through Claude Code. Use when asked to "visualize protein", "render structure", "show cartoon", "color by chain", "ray trace", "set up pymol", "install pymol", or work with molecular graphics. Handles setup, visualization commands, and publication-quality figure generation. Source: aminoanalytica/amina-skills.
Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/aminoanalytica/amina-skills --skill pymol Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code, Cursor, or OpenClaw
https://github.com/aminoanalytica/amina-skills