pdb-database

The Protein Data Bank hosts over 200,000 experimentally determined macromolecular structures plus computed models from AlphaFold and ModelArchive. This skill provides programmatic access to search, download, and analyze structural data.

| Structure Retrieval | Download coordinates for a known PDB ID | | Similarity Search | Find structures similar by sequence or 3D fold | | Metadata Access | Get resolution, method, organism, ligands | | Dataset Building | Compile structures for ML training or analysis | | Drug Discovery | Identify ligand-bound structures for a target |

| Quality Filtering | Select high-resolution, well-refined structures |

RCSB PDB からタンパク質/核酸構造をクエリして取得します。 PDB データベースで構造またはメタデータを検索する必要がある場合に使用します。構造生物学ワークフローのテキスト、配列、構造ベースの検索、座標のダウンロード、メタデータの取得をサポートします。 ソース: aminoanalytica/amina-skills。