nextflow-development

Run nf-core bioinformatics pipelines on local or public sequencing data.

Target users: Bench scientists and researchers without specialized bioinformatics training who need to run large-scale omics analyses—differential expression, variant calling, or chromatin accessibility analysis.

For public datasets, fetch from GEO/SRA first. See references/geo-sra-acquisition.md for the full workflow.

对测序数据运行 nf-core 生物信息学管道（rnaseq、sarek、atacseq）。在分析 RNA-seq、WGS/WES 或 ATAC-seq 数据（本地 FASTQ 或来自 GEO/SRA 的公共数据集）时使用。触发 nf-core、Nextflow、FASTQ 分析、变体调用、基因表达、差异表达、GEO 再分析、GSE/GSM/SRR 加入或样本表创建。 来源：anthropics/knowledge-work-plugins。