nextflow-development

Run nf-core bioinformatics pipelines on local or public sequencing data.

Target users: Bench scientists and researchers without specialized bioinformatics training who need to run large-scale omics analyses—differential expression, variant calling, or chromatin accessibility analysis.

For public datasets, fetch from GEO/SRA first. See references/geo-sra-acquisition.md for the full workflow.

對定序資料運行 nf-core 生物資訊管道（rnaseq、sarek、atacseq）。在分析 RNA-seq、WGS/WES 或 ATAC-seq 資料（本地 FASTQ 或來自 GEO/SRA 的公共資料集）時使用。觸發 nf-core、Nextflow、FASTQ 分析、變異體調用、基因表現、差異表達、GEO 再分析、GSE/GSM/SRR 加入或樣本表建立。 來源：anthropics/knowledge-work-plugins。