pdb

SKILL.md

Note: This skill uses the RCSB PDB web API directly. No Modal deployment needed - all operations run locally via HTTP requests.

Structure not found: Check PDB ID format (4 characters) Multiple models: Select first model for design Missing residues: Check for gaps in structure

Next: Use structure with boltzgen (recommended) or rfdiffusion for design.

Fetch and analyze protein structures from RCSB PDB. Use this skill when: (1) Need to download a structure by PDB ID, (2) Search for similar structures, (3) Prepare target for binder design, (4) Extract specific chains or domains, (5) Get structure metadata. For sequence lookup, use uniprot. For binder design workflow, use binder-design. Source: adaptyvbio/protein-design-skills.

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