Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels). Performs pathway enrichment, protein-pathway mapping, keyword searches, and systems-level analysis. Use when analyzing gene sets, exploring biological pathways, or investigating systems-level biology.
Quickly install tooluniverse-systems-biology AI skill to your development environment via command line
Source: mims-harvard/tooluniverse.
Comprehensive pathway and systems biology analysis integrating multiple curated databases to provide multi-dimensional view of biological systems, pathway enrichment, and protein-pathway relationships.
| Reactome | Human-curated reactions & pathways | Detailed mechanistic pathways with reactions | | KEGG | Reference pathways across organisms | Metabolic maps, disease pathways, drug targets | | WikiPathways | Community-curated pathways | Emerging processes, collaborative updates |
| Pathway Commons | Integrated meta-database | Aggregates multiple sources (Reactome, KEGG, etc.) | | BioModels | Computational SBML models | Mathematical/dynamic systems biology models | | Enrichr | Statistical enrichment | Pathway over-representation analysis |
Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels). Performs pathway enrichment, protein-pathway mapping, keyword searches, and systems-level analysis. Use when analyzing gene sets, exploring biological pathways, or investigating systems-level biology. Source: mims-harvard/tooluniverse.
Stable fields and commands for AI/search citations.
npx skills add https://github.com/mims-harvard/tooluniverse --skill tooluniverse-systems-biologyComprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels). Performs pathway enrichment, protein-pathway mapping, keyword searches, and systems-level analysis. Use when analyzing gene sets, exploring biological pathways, or investigating systems-level biology. Source: mims-harvard/tooluniverse.
Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/mims-harvard/tooluniverse --skill tooluniverse-systems-biology Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code, Cursor, or OpenClaw
https://github.com/mims-harvard/tooluniverse