alphafold-database

SKILL.md

AlphaFold DB is a public repository of AI-predicted 3D protein structures for over 200 million proteins, maintained by DeepMind and EMBL-EBI. Access structure predictions with confidence metrics, download coordinate files, retrieve bulk datasets, and integrate predictions into computational workflows.

This skill should be used when working with AI-predicted protein structures in scenarios such as:

The Biopython library provides the simplest interface for retrieving AlphaFold structures:

Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology. Source: ovachiever/droid-tings.

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