What is bio-workflow-methods-docwriter?
Generate reproducible Methods documentation from workflow run artifacts (Nextflow/Snakemake/CWL), including exact commands, versions, parameters, QC gates, and outputs. Source: fmschulz/omics-skills.
·bio-workflow-methods-docwriter
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bio-workflow-methods-docwriter
✓Generate reproducible Methods documentation from workflow run artifacts (Nextflow/Snakemake/CWL), including exact commands, versions, parameters, QC gates, and outputs.
Installation
How to Install bio-workflow-methods-docwriter
Quickly install bio-workflow-methods-docwriter AI skill to your development environment via command line
- Open Terminal: Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.)
- Run Installation Command: Copy and run this command: npx skills add https://github.com/fmschulz/omics-skills --skill bio-workflow-methods-docwriter
- Verify Installation: Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code, Cursor, or OpenClaw
Source: fmschulz/omics-skills.
SKILL.md
View rawCreate publication-ready Methods and run documentation from real workflow artifacts.
| Evidence checklist | See reference/evidence-checklist.md | | Manifest schema | schemas/run-manifest.schema.json | | Validate manifest | python scripts/validaterunmanifest.py runmanifest.yaml | | Examples | See examples/ |
Issue: Missing tool versions in logs Solution: Mark as NOT CAPTURED and add a note on how to capture next time.
Generate reproducible Methods documentation from workflow run artifacts (Nextflow/Snakemake/CWL), including exact commands, versions, parameters, QC gates, and outputs. Source: fmschulz/omics-skills.
Facts (cite-ready)
Stable fields and commands for AI/search citations.
- Install command
npx skills add https://github.com/fmschulz/omics-skills --skill bio-workflow-methods-docwriter- Source
- fmschulz/omics-skills
- Category
- >_Productivity
- Verified
- ✓
- First Seen
- 2026-02-26
- Updated
- 2026-03-11
Quick answers
How do I install bio-workflow-methods-docwriter?
Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/fmschulz/omics-skills --skill bio-workflow-methods-docwriter Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code, Cursor, or OpenClaw
Where is the source repository?
https://github.com/fmschulz/omics-skills
Details
- Category
- >_Productivity
- Source
- skills.sh
- First Seen
- 2026-02-26