tooluniverse-protein-structure-retrieval
✓Retrieves protein structure data from RCSB PDB, PDBe, and AlphaFold with protein disambiguation, quality assessment, and comprehensive structural profiles. Creates detailed structure reports with experimental metadata, ligand information, and download links. Use when users need protein structures, 3D models, crystallography data, or mention PDB IDs (4-character codes like 1ABC) or UniProt accessions.
Installation
SKILL.md
Retrieve protein structures with proper disambiguation, quality assessment, and comprehensive metadata.
Common ambiguous terms: | Term | Ambiguity | Resolution |
| "kinase" | Hundreds of kinases | Ask which kinase (EGFR, CDK2, etc.) | | "receptor" | Many receptor types | Specify receptor family | | "protease" | Multiple families | Ask serine/cysteine/metallo/etc. | | "hemoglobin" | Clear | Proceed (α/β chain specified if needed) | | "insulin" | Clear | Proceed |
Retrieves protein structure data from RCSB PDB, PDBe, and AlphaFold with protein disambiguation, quality assessment, and comprehensive structural profiles. Creates detailed structure reports with experimental metadata, ligand information, and download links. Use when users need protein structures, 3D models, crystallography data, or mention PDB IDs (4-character codes like 1ABC) or UniProt accessions. Source: mims-harvard/tooluniverse.
Facts (cite-ready)
Stable fields and commands for AI/search citations.
- Install command
npx skills add https://github.com/mims-harvard/tooluniverse --skill tooluniverse-protein-structure-retrieval- Category
- {}Data Analysis
- Verified
- ✓
- First Seen
- 2026-02-05
- Updated
- 2026-02-18
Quick answers
What is tooluniverse-protein-structure-retrieval?
Retrieves protein structure data from RCSB PDB, PDBe, and AlphaFold with protein disambiguation, quality assessment, and comprehensive structural profiles. Creates detailed structure reports with experimental metadata, ligand information, and download links. Use when users need protein structures, 3D models, crystallography data, or mention PDB IDs (4-character codes like 1ABC) or UniProt accessions. Source: mims-harvard/tooluniverse.
How do I install tooluniverse-protein-structure-retrieval?
Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/mims-harvard/tooluniverse --skill tooluniverse-protein-structure-retrieval Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code or Cursor
Where is the source repository?
https://github.com/mims-harvard/tooluniverse
Details
- Category
- {}Data Analysis
- Source
- skills.sh
- First Seen
- 2026-02-05