Domain-validated pipeline guidance for calcium imaging data analysis: motion correction, ROI extraction, neuropil correction, spike inference, and quality control
Quickly install calcium imaging analysis guide AI skill to your development environment via command line
Source: haoxuanlithuai/awesome_cognitive_and_neuroscience_skills.
This skill encodes expert methodological knowledge for analyzing calcium imaging data from fluorescent genetically encoded calcium indicators (GECIs). It covers the domain-specific decisions that a general-purpose programmer or data scientist would get wrong without specialized training in optical neurophysiology: choosing deconvolution parameters based on indicator kinetics, correcting neuropil contamination, han...
This skill was generated by AI from academic literature. All parameters, thresholds, and citations require independent verification before use in research. If you find errors, please open an issue.
Motion correction must precede all other analysis. Uncorrected motion creates false transients and blurs cellular signals.
Domain-validated pipeline guidance for calcium imaging data analysis: motion correction, ROI extraction, neuropil correction, spike inference, and quality control Source: haoxuanlithuai/awesome_cognitive_and_neuroscience_skills.
Stable fields and commands for AI/search citations.
npx skills add https://github.com/haoxuanlithuai/awesome_cognitive_and_neuroscience_skills --skill calcium imaging analysis guideBrowse more skills from haoxuanlithuai/awesome_cognitive_and_neuroscience_skills
Domain-validated pipeline guidance for calcium imaging data analysis: motion correction, ROI extraction, neuropil correction, spike inference, and quality control Source: haoxuanlithuai/awesome_cognitive_and_neuroscience_skills.
Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/haoxuanlithuai/awesome_cognitive_and_neuroscience_skills --skill calcium imaging analysis guide Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code, Cursor, or OpenClaw
https://github.com/haoxuanlithuai/awesome_cognitive_and_neuroscience_skills