protein-design-workflow

SKILL.md

| RFdiffusion | A10G | 30 min | | ProteinMPNN | T4 | 15 min | | ColabFold | A100 | 4-8 hours | | Filtering | CPU | 15 min |

| Low ipTM | Check hotspots, increase designs | | Poor diversity | Higher temperature, more backbones | | High scRMSD | Backbone may be unusual | | Low pLDDT | Check design quality |

End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple design tools. For tool selection, use binder-design. For QC thresholds, use protein-qc. Source: adaptyvbio/protein-design-skills.

Open your terminal or command line tool (Terminal, iTerm, Windows Terminal, etc.) Copy and run this command: npx skills add https://github.com/adaptyvbio/protein-design-skills --skill protein-design-workflow Once installed, the skill will be automatically configured in your AI coding environment and ready to use in Claude Code or Cursor

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