deeptools

SKILL.md

deepTools is a comprehensive suite of Python command-line tools designed for processing and analyzing high-throughput sequencing data. Use deepTools to perform quality control, normalize data, compare samples, and generate publication-quality visualizations for ChIP-seq, RNA-seq, ATAC-seq, MNase-seq, and other NGS experiments.

For users new to deepTools, start with file validation and common workflows:

Before running any analysis, validate BAM, bigWig, and BED files using the validation script:

NGS 분석 툴킷. BAM에서 bigWig로의 변환, QC(상관관계, PCA, 지문), 히트맵/프로파일(TSS, 피크), ChIP-seq, RNA-seq, ATAC-seq 시각화용. 출처: microck/ordinary-claude-skills.

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