deeptools

SKILL.md

deepTools is a comprehensive suite of Python command-line tools designed for processing and analyzing high-throughput sequencing data. Use deepTools to perform quality control, normalize data, compare samples, and generate publication-quality visualizations for ChIP-seq, RNA-seq, ATAC-seq, MNase-seq, and other NGS experiments.

For users new to deepTools, start with file validation and common workflows:

Before running any analysis, validate BAM, bigWig, and BED files using the validation script:

Kit de herramientas de análisis NGS. Conversión de BAM a bigWig, control de calidad (correlación, PCA, huellas dactilares), mapas de calor/perfiles (TSS, picos), para visualización de ChIP-seq, RNA-seq, ATAC-seq. Fuente: ovachiever/droid-tings.

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