gget

SKILL.md

gget is a command-line bioinformatics tool and Python package providing unified access to 20+ genomic databases and analysis methods. Query gene information, sequence analysis, protein structures, expression data, and disease associations through a consistent interface. All gget modules work both as command-line tools and as Python functions.

Important: The databases queried by gget are continuously updated, which sometimes changes their structure. gget modules are tested automatically on a biweekly basis and updated to match new database structures when necessary.

Install gget in a clean virtual environment to avoid conflicts:

CLI/Python-Toolkit für schnelle Bioinformatik-Abfragen. Bevorzugt für schnelle BLAST-Suchen. Zugriff auf über 20 Datenbanken: Geninformationen (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, Genom-Downloads. Für erweiterte BLAST-/Stapelverarbeitung verwenden Sie Biopython. Verwenden Sie für die Integration mehrerer Datenbanken Bioservices. Quelle: jackspace/claudeskillz.

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